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ERX4964205: Illumina HiSeq 2000 paired end sequencing
1 ILLUMINA (Illumina HiSeq 2000) run: 158,064 spots, 63M bases, 38.6Mb downloads

Submitted by: UNIVERSIDADE FEDERAL DE VICOSA
Study: Genomics and antimicrobials from ruminal streptococci
show Abstracthide Abstract
The Streptococcus bovis/equinus complex comprises a group of lactic acid bacteria with diverse lifestyles, varying from commensals, saprotrophs and opportunistic pathogens. Members of the complex show high adaptive capacity in different ecosystems and can be frequently isolated from the gastrointestinal tract (GIT) of mammals, food products of animal origin and clinical environments. In this study, the objective is to isolate, characterize and sequence the genome of ruminal streptococci obtained from the rumen of grazing cattle. The antimicrobial activity of these isolates against pathogenic bacteria will be evaluated. Computational analysis will be used to mine biosynthetic clusters for antimicrobial agents and comparative genomics will be carried out to compare nutritional requirements, pathogenic potential and evaluate differences between ruminal and non-ruminal streptococci.
Sample: Isolate from bovine rumen
SAMEA7833116 • ERS5580299 • All experiments • All runs
Library:
Name: unspecified
Instrument: Illumina HiSeq 2000
Strategy: WGS
Source: GENOMIC
Selection: unspecified
Layout: PAIRED
Runs: 1 run, 158,064 spots, 63M bases, 38.6Mb
Run# of Spots# of BasesSizePublished
ERR5159234158,06463M38.6Mb2021-01-31

ID:
13084567

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